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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6086217_6086335_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6086217 - 6086335
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
AAATCTTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
AAAATCTTACAC
Flanking Amino Acid:
GRGRPKDATDRCCQLHDTCY
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
64.8
0.33
1
58.3
41.2
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
47
-0.2
1.7
52.85
37.7

Associated Gene:

Gene:
PLA2G2D
Ensembl Gene ID:
ENSAPLG00000024116
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027432
6082981 - 6089847
6867