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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_609106_644043_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
609106 - 644043
Intron Length:
34938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
ATCGCTTTATTT
Flanking Amino Acid:
HFLSANVITVVERCMSSMQA
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
91.1
0.93
0.7
89.2
26.8
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
54.3
0.21
1.7
69.31
42.7

Associated Gene:

Gene:
PLCH2
Ensembl Gene ID:
ENSAPLG00000008995
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024566
608633 - 677192
68560