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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6092071_6092194_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6092071 - 6092194
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
GGCAGGTCTCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GTGCTCCTAACG
Flanking Amino Acid:
MKLLVLLVCLVGLVPVDVD
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.3
70.1
40.6
Major BPS
72
0.55
1
71.8
31.4
Major PPT
58.9
0.2
1.1
46.2
45.8
Minor 5ss
38.9
-1.3
2.7
51.9
37.5
Minor BPS
51.5
-0
1.8
58.19
43.1

Associated Gene:

Gene:
PLA2G2E
Ensembl Gene ID:
ENSAPLG00000006393
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006621
6092043 - 6093310
1268