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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6092349_6092432_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6092349 - 6092432
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GCAGCTGGAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTCAA
U12 Branch Point Sequence:
TCCTCCCAAAGC
Flanking Amino Acid:
GGKQPLDATDWHCRSHRSSS
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
61.8
0.29
1.1
63.4
35.6
Major PPT
49.6
-0
1.1
43
41.9
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
45.6
-0.3
2.2
58.49
46.6

Associated Gene:

Gene:
PLA2G2E
Ensembl Gene ID:
ENSAPLG00000006393
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006621
6092043 - 6093310
1268