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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6097517_6097844_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6097517 - 6097844
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGTTTTCAACT
Flanking Amino Acid:
ENSQSSKNAKVSKKQKKEQQ
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
100
1.24
0.5
100
0
Major PPT
86.7
0.83
0.7
84.2
23.6
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
61.7
0.45
1.6
75.09
42.3

Associated Gene:

Gene:
OTUD3
Ensembl Gene ID:
ENSAPLG00000006113
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006339
6095928 - 6104248
8321