About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6099562_6100251_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6099562 - 6100251
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTTAC
5'SS Class:
major
3'SS Sequence:
GCTTTTCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
GTATGATGAAAT
Flanking Amino Acid:
SEAPAYLQMEMLSKSEANEE
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
70.5
36.5
Major BPS
61.3
0.28
1
62
30.6
Major PPT
79.9
0.67
0.8
77.9
31
Minor 5ss
35.5
-1.7
2.9
43.7
44.1
Minor BPS
45
-0.3
2.1
65.72
43.7

Associated Gene:

Gene:
OTUD3
Ensembl Gene ID:
ENSAPLG00000006113
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006339
6095928 - 6104248
8321