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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6100375_6102838_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6100375 - 6102838
Intron Length:
2464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTCAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
AAATCCTCATTT
Flanking Amino Acid:
IHQLNAPLWQIRGTDKNNAR
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
64.3
0.32
1
64.4
41.7
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
52.7
0.16
1.8
69.19
41.5

Associated Gene:

Gene:
OTUD3
Ensembl Gene ID:
ENSAPLG00000006113
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006339
6095928 - 6104248
8321