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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6102952_6103719_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6102952 - 6103719
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACAGACG
5'SS Class:
major
3'SS Sequence:
TGTTTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAATG
Flanking Amino Acid:
VEDDVPFDRHVTNLAKPGTF
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.9
0.26
1.1
51.8
44.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
87.7
0.85
0.7
85.6
29.1
Minor 5ss
31.3
-2.1
3.4
40.6
45.5
Minor BPS
64.5
0.32
1.5
67.49
40.7

Associated Gene:

Gene:
OTUD3
Ensembl Gene ID:
ENSAPLG00000006113
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006339
6095928 - 6104248
8321