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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6103869_6104114_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6103869 - 6104114
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
CGTTTCAGAAAC
Flanking Amino Acid:
GLKLREVPGDGNCLFRALGD
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
64.9
0.37
1
61
37.5
Major PPT
75.5
0.57
0.7
73.9
24.3
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
46.8
-0.2
1.8
58.17
40

Associated Gene:

Gene:
OTUD3
Ensembl Gene ID:
ENSAPLG00000006113
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006339
6095928 - 6104248
8321