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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6114038_6114877_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6114038 - 6114877
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTCCATTTATT
Flanking Amino Acid:
MAEQGCCEEGGHVSVAAACV
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
74.3
0.55
0.9
73.4
36.1
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
59.8
0.39
1.9
83.13
37.4

Associated Gene:

Gene:
TMCO4
Ensembl Gene ID:
ENSAPLG00000005788
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031157
6114007 - 6156749
42743