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Intron Name: Anas_platyrhynchos_platyrhynchos_22_6118101_6122646_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6118101 - 6122646

Intron Length:

4546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTCCA

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAC

U12 Branch Point Sequence:

TTCACTTTAACT

Flanking Amino Acid:

LKDNPVVIIQDLLSFSLKDG

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

74.4

Major BPS

77.3

0.68

79.3

29.4

Major PPT

85.4

0.8

0.6

84.6

23.2

Minor 5ss

36.2

-1.6

2.9

37.7

Minor BPS

79.1

0.99

1.2

88.46

36.7

Associated Gene:

Gene:

TMCO4

Ensembl Gene ID:

ENSAPLG00000005788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033238

6116046 - 6155220

39175

ENSAPLT00000031157

6114007 - 6156749

42743

ENSAPLT00000005989

6116046 - 6155282

39237