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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6122675_6125167_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6122675 - 6125167
Intron Length:
2493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTGTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTGATTTAATT
Flanking Amino Acid:
QDLLSFSLKDGYYDARARVL
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
63.6
0.31
1.1
66.2
38.8
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
57.4
0.31
1.6
70.58
41.2

Associated Gene:

Gene:
TMCO4
Ensembl Gene ID:
ENSAPLG00000005788
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031157
6114007 - 6156749
42743
ENSAPLT00000005989
6116046 - 6155282
39237
ENSAPLT00000033238
6116046 - 6155220
39175