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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6125301_6130743_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6125301 - 6130743
Intron Length:
5443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGAACA
5'SS Class:
major
3'SS Sequence:
AATTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCAGCT
Flanking Amino Acid:
SLKEQKEEESESAEVSRKKK
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
68.1
37
Major BPS
100
1.24
0.5
100
0
Major PPT
80.6
0.69
0.9
74
35.6
Minor 5ss
35
-1.7
2.9
38.6
40
Minor BPS
59.3
0.37
2.1
86.08
39.5

Associated Gene:

Gene:
TMCO4
Ensembl Gene ID:
ENSAPLG00000005788
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033238
6116046 - 6155220
39175
ENSAPLT00000031157
6114007 - 6156749
42743
ENSAPLT00000005989
6116046 - 6155282
39237