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Intron Name: Anas_platyrhynchos_platyrhynchos_22_6130842_6131697_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6130842 - 6131697

Intron Length:

856

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGGCTG

5'SS Class:

major

3'SS Sequence:

GTTCCCTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

TGGTACTAGACT

Flanking Amino Acid:

LATVGGGTVIGLTGGLAAPL

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

60.8

45.3

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

0.7

0.8

77.5

31.2

Minor 5ss

29.4

-2.4

3.4

39.3

Minor BPS

0.18

1.9

72.88

Associated Gene:

Gene:

TMCO4

Ensembl Gene ID:

ENSAPLG00000005788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033238

6116046 - 6155220

39175

ENSAPLT00000031157

6114007 - 6156749

42743

ENSAPLT00000005989

6116046 - 6155282

39237