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Intron Name: Anas_platyrhynchos_platyrhynchos_22_6132463_6134196_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6132463 - 6134196

Intron Length:

1734

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

TGACTTTTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTCCAT

U12 Branch Point Sequence:

TTTCTGTCAACA

Flanking Amino Acid:

ITGWLCAGKYGSFTAPWSSL

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

69.1

35.7

Major BPS

68.5

0.46

1.2

78.5

35.1

Major PPT

78.5

0.64

0.9

76.6

37.2

Minor 5ss

31.2

-2.1

3.3

40.6

45.1

Minor BPS

51.4

0.04

2.2

72.76

39.1

Associated Gene:

Gene:

TMCO4

Ensembl Gene ID:

ENSAPLG00000005788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033238

6116046 - 6155220

39175

ENSAPLT00000031157

6114007 - 6156749

42743

ENSAPLT00000005989

6116046 - 6155282

39237

ENSAPLT00000043469

6132114 - 6154546

22433