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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6134362_6134899_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6134362 - 6134899
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TGACTGTGCAGT
Flanking Amino Acid:
QEALKLTVLSGIVTALTWPT
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
78.8
0.65
1
72.9
42.2
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
34.7
-1.1
2.4
51.31
42.7

Associated Gene:

Gene:
TMCO4
Ensembl Gene ID:
ENSAPLG00000005788
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043469
6132114 - 6154546
22433
ENSAPLT00000033238
6116046 - 6155220
39175
ENSAPLT00000031157
6114007 - 6156749
42743
ENSAPLT00000005989
6116046 - 6155282
39237