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Intron Name: Anas_platyrhynchos_platyrhynchos_22_6135037_6137198_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6135037 - 6137198

Intron Length:

2162

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTGGC

5'SS Class:

strong_major

3'SS Sequence:

CCTTTGTTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

CAGTATTTGATG

Flanking Amino Acid:

LAHILLSRQQGKRPVTLIGF

Intron Amino Acid Position:

416

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

72.5

37.5

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

77.5

0.62

0.8

76.2

32.4

Minor 5ss

33.1

-1.9

3.2

44.4

43.3

Minor BPS

47.9

-0.3

1.6

47.28

40.6

Associated Gene:

Gene:

TMCO4

Ensembl Gene ID:

ENSAPLG00000005788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031157

6114007 - 6156749

42743

ENSAPLT00000005989

6116046 - 6155282

39237

ENSAPLT00000043469

6132114 - 6154546

22433

ENSAPLT00000033238

6116046 - 6155220

39175