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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6137284_6138693_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6137284 - 6138693
Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCTC
5'SS Class:
major
3'SS Sequence:
TTCACCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCACCTTGACA
Flanking Amino Acid:
FCLQEMAQEKDSQGIIEDVV
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
41.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
72.5
0.51
1
68.2
37.4
Minor 5ss
41.8
-0.9
3.2
59.1
45.6
Minor BPS
75.6
0.8
1.2
79.43
36.7

Associated Gene:

Gene:
TMCO4
Ensembl Gene ID:
ENSAPLG00000005788
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033238
6116046 - 6155220
39175
ENSAPLT00000031157
6114007 - 6156749
42743
ENSAPLT00000005989
6116046 - 6155282
39237
ENSAPLT00000043469
6132114 - 6154546
22433