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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6138812_6141763_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6138812 - 6141763
Intron Length:
2952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCG
5'SS Class:
major
3'SS Sequence:
GCTCTGCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CATTTATTCATG
Flanking Amino Acid:
VSGRIINGYCRGDWLLGFVY
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
41.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
66.7
0.38
0.9
57.7
38.5
Minor 5ss
28.4
-2.5
2.9
33.2
41.8
Minor BPS
46
-0.4
2
52.76
42.5

Associated Gene:

Gene:
TMCO4
Ensembl Gene ID:
ENSAPLG00000005788
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031157
6114007 - 6156749
42743
ENSAPLT00000005989
6116046 - 6155282
39237
ENSAPLT00000043469
6132114 - 6154546
22433
ENSAPLT00000033238
6116046 - 6155220
39175