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Intron Name: Anas_platyrhynchos_platyrhynchos_22_6141882_6154231_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6141882 - 6154231

Intron Length:

12350

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTC|GTAAGTACA

5'SS Class:

major

3'SS Sequence:

TGTTTGCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAC

U12 Branch Point Sequence:

TCCCCACTAACC

Flanking Amino Acid:

RMVNMDLSSVVKGHLDYMKQ

Intron Amino Acid Position:

523

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.5

0.53

1.3

73.3

37.4

Major BPS

64.5

0.36

65.2

28.2

Major PPT

79.2

0.66

0.9

73.9

36.8

Minor 5ss

37.5

-1.4

2.6

44.5

37.1

Minor BPS

48.8

-0.1

62.08

42.9

Associated Gene:

Gene:

TMCO4

Ensembl Gene ID:

ENSAPLG00000005788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031157

6114007 - 6156749

42743

ENSAPLT00000005989

6116046 - 6155282

39237

ENSAPLT00000043469

6132114 - 6154546

22433

ENSAPLT00000033238

6116046 - 6155220

39175