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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6158406_6158625_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6158406 - 6158625
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
ATGCCACTAATC
Flanking Amino Acid:
LPFFITNMTQAVCECVPAGF
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
70.7
0.47
0.9
63.2
38.3
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
47.9
-0.1
1.9
60.57
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016334
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017043
6157793 - 6161909
4117