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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_617001_644043_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
617001 - 644043
Intron Length:
27043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
ATCGCTTTATTT
Flanking Amino Acid:
MNVERCMSSMQA
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.3
36.7
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
91.1
0.93
0.7
89.2
26.8
Minor 5ss
32.2
-2
3.4
44
43.3
Minor BPS
54.3
0.21
1.7
69.31
42.7

Associated Gene:

Gene:
PLCH2
Ensembl Gene ID:
ENSAPLG00000008995
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009364
616883 - 675778
58896