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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6171261_6171929_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6171261 - 6171929
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTAGT
5'SS Class:
major
3'SS Sequence:
TTCTCTCTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCTAT
U12 Branch Point Sequence:
TTCTCTCTAACA
Flanking Amino Acid:
EDAPMIFERLSTAVRDADLC
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
68.1
42.8
Major BPS
58.7
0.22
1.5
58.5
47.9
Major PPT
80.8
0.69
0.8
77.2
30.1
Minor 5ss
44.8
-0.6
2.6
56
42.4
Minor BPS
69.6
0.61
1.6
79.78
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022256
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028038
6168134 - 6172920
4787