Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6188929_6189134_F

Intron Information:

Intron Rank:

135600

Intron Class:

major

Intron Phase:

Intron Coordinates:

6188929 - 6189134

Intron Length:

206

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGCCA

5'SS Class:

strong_major

3'SS Sequence:

TGCCTTTCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

TGCCTTTCCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

68.4

38.2

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

77.2

0.61

0.8

71.7

32.9

Minor 5ss

25.6

-2.8

30.5

42.8

Minor BPS

43.9

-0.4

1.9

52.9

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022957

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029639

6188419 - 6189878

1460