About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6188929_6190780_F

Intron Information:

Intron Rank:
135601
Intron Class:
major
Intron Phase:
Intron Coordinates:
6188929 - 6190780
Intron Length:
1852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
CTTTTGCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
79.5
0.66
0.9
77.9
36.6
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
48.2
-0.1
2.3
66.95
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022957
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032141
6188419 - 6191120
2702