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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6192326_6198755_F

Intron Information:

Intron Rank:
129109
Intron Class:
major
Intron Phase:
Intron Coordinates:
6192326 - 6198755
Intron Length:
6430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
CTTCCCTGAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
82.4
0.73
0.8
77.7
31
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
59.7
0.38
1.8
78.75
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019455
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031501
6191665 - 6199796
8132