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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6214979_6216540_F

Intron Information:

Intron Rank:
129805
Intron Class:
major
Intron Phase:
Intron Coordinates:
6214979 - 6216540
Intron Length:
1562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GTGGAGCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
70.9
36.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
24.6
-2.9
3
28.8
43.6
Minor BPS
41.7
-0.5
2.4
62.3
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019865
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036556
6212716 - 6218105
5390