About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6272127_6272517_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6272127 - 6272517
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATGAC
U12 Branch Point Sequence:
TTGTGTGGAATG
Flanking Amino Acid:
HGDRISEETKWDSINEMDEF
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
49.7
-0
1.2
43.4
39.2
Major PPT
77.7
0.62
0.8
72.2
32.4
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
41.5
-0.7
2.3
51.18
44.2

Associated Gene:

Gene:
EPHA8
Ensembl Gene ID:
ENSAPLG00000003107
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041810
6272094 - 6293987
21894