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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6273182_6283977_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6273182 - 6283977
Intron Length:
10796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CCCTCCTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAC
U12 Branch Point Sequence:
TCCCCCTGACCA
Flanking Amino Acid:
GYEEQRDACMACQLGFYKSA
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
53.4
0.09
1.1
57.3
37.7
Major PPT
78.4
0.64
0.7
72.3
25.8
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
50.1
0
1.8
61.44
44.5

Associated Gene:

Gene:
EPHA8
Ensembl Gene ID:
ENSAPLG00000003107
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041810
6272094 - 6293987
21894
ENSAPLT00000027177
6250908 - 6293987
43080
ENSAPLT00000003273
6250908 - 6293987
43080