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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6285580_6285748_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6285580 - 6285748
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCA
5'SS Class:
major
3'SS Sequence:
CGCTTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGAGAT
U12 Branch Point Sequence:
CGCTTCTCCACA
Flanking Amino Acid:
LEYEIKYYEKDKEMQSYSTL
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.6
40
Major BPS
51.7
0.04
1.3
50.1
44.2
Major PPT
74.2
0.55
0.8
68
32.3
Minor 5ss
30.4
-2.2
3.3
39.6
45.9
Minor BPS
46.6
-0.2
2
55.34
43.9

Associated Gene:

Gene:
EPHA8
Ensembl Gene ID:
ENSAPLG00000003107
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003273
6250908 - 6293987
43080
ENSAPLT00000041810
6272094 - 6293987
21894
ENSAPLT00000027177
6250908 - 6293987
43080