About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6285912_6286241_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6285912 - 6286241
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTATTTCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
TCCTTCCTACCC
Flanking Amino Acid:
QTVEVETGKPVSLRYDTMTI
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
80.5
0.69
0.8
73.1
37.1
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
49
-0.1
2
61.98
43.8

Associated Gene:

Gene:
EPHA8
Ensembl Gene ID:
ENSAPLG00000003107
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041810
6272094 - 6293987
21894
ENSAPLT00000027177
6250908 - 6293987
43080
ENSAPLT00000003273
6250908 - 6293987
43080