Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6287198_6287898_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6287198 - 6287898

Intron Length:

701

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

TCTTGCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

ATGCCCTCACCT

Flanking Amino Acid:

RIKIEKVIGSGESGEVCYGR

Intron Amino Acid Position:

629

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

0.9

67.6

37.6

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

83.4

0.75

0.8

77.1

31.6

Minor 5ss

30.2

-2.3

2.8

Minor BPS

0.17

1.9

72.36

44.2

Associated Gene:

Gene:

EPHA8

Ensembl Gene ID:

ENSAPLG00000003107

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027177

6250908 - 6293987

43080

ENSAPLT00000003273

6250908 - 6293987

43080

ENSAPLT00000041810

6272094 - 6293987

21894