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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6291072_6292179_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6291072 - 6292179
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTGGA
5'SS Class:
major
3'SS Sequence:
GGCTTCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGAGCAG
U12 Branch Point Sequence:
TCTGCTCCAGCG
Flanking Amino Acid:
RPYWNMTNRDVINSVEEGYR
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.5
38.7
Major BPS
36.3
-0.8
1.5
37.2
42.1
Major PPT
75.6
0.58
0.9
65.6
41
Minor 5ss
28
-2.5
3
30.2
36.2
Minor BPS
40.8
-0.8
2.1
47.84
45.6

Associated Gene:

Gene:
EPHA8
Ensembl Gene ID:
ENSAPLG00000003107
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041810
6272094 - 6293987
21894
ENSAPLT00000027177
6250908 - 6293987
43080
ENSAPLT00000003273
6250908 - 6293987
43080