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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6292371_6292684_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6292371 - 6292684
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
GTCCCACTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TAATTCATCACT
Flanking Amino Acid:
DSLKCTATVNRFTQTPFDRG
Intron Amino Acid Position:
895

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
69.9
0.45
0.9
65.8
34.9
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
51.7
0.13
2
74.79
41.5

Associated Gene:

Gene:
EPHA8
Ensembl Gene ID:
ENSAPLG00000003107
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041810
6272094 - 6293987
21894
ENSAPLT00000003273
6250908 - 6293987
43080