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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6292371_6293872_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6292371 - 6293872
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
GTGTCCTTATTC
Flanking Amino Acid:
DSLKCTATVNRDIRSLGITM
Intron Amino Acid Position:
895

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
81.5
0.71
0.8
72.9
37.1
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
65.7
0.47
1.6
70.95
40.8

Associated Gene:

Gene:
EPHA8
Ensembl Gene ID:
ENSAPLG00000003107
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027177
6250908 - 6293987
43080