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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6303081_6304896_R

Intron Information:

Intron Rank:
142896
Intron Class:
major
Intron Phase:
Intron Coordinates:
6303081 - 6304896
Intron Length:
1816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCCACTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.2
30.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.3
0.75
0.8
77.2
35.1
Minor 5ss
32.8
-2
3.7
46.2
49.1
Minor BPS
53.5
0.19
1.7
67.86
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024197
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018246
6296800 - 6306273
9474