Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6305013_6306189_R

Intron Information:

Intron Rank:

142897

Intron Class:

major

Intron Phase:

Intron Coordinates:

6305013 - 6306189

Intron Length:

1177

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAGGTGTC

5'SS Class:

major

3'SS Sequence:

TGCTTAATTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTAAT

U12 Branch Point Sequence:

GTATGCTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.8

0.37

1.2

65.4

40.4

Major BPS

69.2

0.48

1.3

71.9

Major PPT

0.63

0.9

74.5

39.1

Minor 5ss

38.8

-1.3

3.6

61.4

43.6

Minor BPS

68.4

0.66

1.8

81.66

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024197

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018246

6296800 - 6306273

9474