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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6306466_6315499_R

Intron Information:

Intron Rank:
142898
Intron Class:
major
Intron Phase:
Intron Coordinates:
6306466 - 6315499
Intron Length:
9034

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAACAAG
5'SS Class:
strong_major
3'SS Sequence:
GTGCATTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTGTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1.1
65
46.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.8
0.58
1
69.1
41.5
Minor 5ss
27.8
-2.6
3.9
38.7
46.6
Minor BPS
55.4
0.15
2
70.66
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024197
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025885
6305873 - 6315512
9640