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Intron Name: Anas_platyrhynchos_platyrhynchos_22_6327960_6328088_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6327960 - 6328088

Intron Length:

129

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGGC

5'SS Class:

strong_major

3'SS Sequence:

TGTCTCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATCAT

U12 Branch Point Sequence:

GTGGCATGAACA

Flanking Amino Acid:

PGQKGDVGEPGKPAPRTGIR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

73.9

36.8

Major BPS

66.8

0.42

1.1

37.7

Major PPT

77.8

0.63

0.8

69.6

36.7

Minor 5ss

29.6

-2.3

3.5

41.1

45.6

Minor BPS

49.6

-0

1.9

62.46

43.2

Associated Gene:

Gene:

C1QA

Ensembl Gene ID:

ENSAPLG00000023730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040505

6327787 - 6329182

1396