About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6330362_6330494_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6330362 - 6330494
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
CAG|GTCTTGCAG
5'SS Class:
weak_major
3'SS Sequence:
TGACTTCCTCCGG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCTTTCCTAACT
Flanking Amino Acid:
CCGDNAWHKHRRVSQRETQV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54
0.1
1.4
45.9
43.6
Major BPS
72
0.55
1
71.8
31.4
Major PPT
42.2
-0.4
3.2
58.7
42.8
Minor 5ss
31.7
-2.1
3.1
38.7
46.4
Minor BPS
72.3
0.78
1.6
88.18
37

Associated Gene:

Gene:
C1QC
Ensembl Gene ID:
ENSAPLG00000029863
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033290
6330156 - 6332698
2543