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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6335443_6335834_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6335443 - 6335834
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
GTGACCACAACA
Flanking Amino Acid:
DGQNGPKGDRGPPGRAEDEG
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.9
76.9
38.6
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
78.8
0.65
0.8
76.6
32
Minor 5ss
30.9
-2.2
3.6
46.8
48.5
Minor BPS
49
-0
1.9
62.79
42.7

Associated Gene:

Gene:
C1QB
Ensembl Gene ID:
ENSAPLG00000002995
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003024
6334307 - 6336409
2103