About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6398645_6402676_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6398645 - 6402676
Intron Length:
4032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
AGCCCACTGACT
Flanking Amino Acid:
LGWTVHPPSGWEEVSGYDEN
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
81.6
0.71
0.8
76.8
31.8
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
45.7
-0.2
1.9
62.31
40.9

Associated Gene:

Gene:
EPHB2
Ensembl Gene ID:
ENSAPLG00000015180
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015943
6394628 - 6473026
78399