About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_64170_64700_R


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
64170 - 64700

Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTTGGACTG

5'SS Class:
major

3'SS Sequence:
GATGTCATGGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ATGTCAT

U12 Branch Point Sequence:
TGATACTTGATG

Flanking Amino Acid:
EVGKQIMQYQVLNEVVVDRG

Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
67.6
0.42
1.2
58.5
46.1

Major BPS
76
0.65
1.1
77.4
37.3

Major PPT
61.4
0.26
1.1
55.4
44.2

Minor 5ss
30.5
-2.2
3.3
39.1
46.1

Minor BPS
57.8
0.1
1.6
61.16
40.6

Associated Gene:

Gene:
NADK

Ensembl Gene ID:

Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

61340 - 75438
14099