Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6460424_6461094_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6460424 - 6461094

Intron Length:

671

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

CCTTGCATGTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTGCAT

U12 Branch Point Sequence:

AGTGCAGTAACG

Flanking Amino Acid:

GKMYFQTMTEAEYQTSVQEK

Intron Amino Acid Position:

531

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.2

1.11

0.7

90.9

28.7

Major BPS

62.7

0.32

1.4

39.9

Major PPT

67.8

0.4

65.9

39.7

Minor 5ss

40.2

-1.1

3.1

58.6

45.9

Minor BPS

45.4

-0.4

2.3

55.73

45.1

Associated Gene:

Gene:

EPHB2

Ensembl Gene ID:

ENSAPLG00000015180

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015943

6394628 - 6473026

78399