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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6464468_6465461_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6464468 - 6465461
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGAGAT
5'SS Class:
major
3'SS Sequence:
CTTTTCCCCTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTTCCCCTAAG
Flanking Amino Acid:
ENGSLDSFLRQNDGQFTVIQ
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
67.7
37.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.8
0.49
1
76.1
26.5
Minor 5ss
37.7
-1.4
3.4
47
48.4
Minor BPS
45.5
-0.5
2.3
62.36
44.7

Associated Gene:

Gene:
EPHB2
Ensembl Gene ID:
ENSAPLG00000015180
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015943
6394628 - 6473026
78399