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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_64853_65684_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64853 - 65684
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTATAT
U12 Branch Point Sequence:
TTCTCCTATATT
Flanking Amino Acid:
FQSQVTQVIEGNAALVLRSR
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
54.3
0.11
1.2
52.6
41.6
Major PPT
79
0.65
0.9
70.7
40.5
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
58.7
0.35
2
79.57
42.9

Associated Gene:

Gene:
NADK
Ensembl Gene ID:
ENSAPLG00000011328
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011820
61340 - 75438
14099