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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6517441_6518373_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6517441 - 6518373
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTTAACA
Flanking Amino Acid:
SVVPNEYTIYRIASVSKIFP
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
74.2
36.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
81.4
0.71
0.9
77.5
35.6
Minor 5ss
29.2
-2.4
3.1
40
45.5
Minor BPS
85.7
1.12
0.9
87.92
29.1

Associated Gene:

Gene:
LACTBL1
Ensembl Gene ID:
ENSAPLG00000015166
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033446
6513972 - 6524247
10276
ENSAPLT00000015800
6514590 - 6524247
9658