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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6518534_6518578_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6518534 - 6518578
Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACA|GCAGATGGG
5'SS Class:
weak_major
3'SS Sequence:
AACACCACTTAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGGAA
U12 Branch Point Sequence:
TTTTTTGGAAAA
Flanking Amino Acid:
RFKESEQRYTPSPVTLRRMA
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.02
1.4
52
42
Major BPS
62.2
0.3
1.4
63.4
44.3
Major PPT
50.8
0.02
1.1
50.9
37.3
Minor 5ss
21.9
-3.2
4.1
35
42.8
Minor BPS
48
-0.1
2.1
68.73
37.7

Associated Gene:

Gene:
LACTBL1
Ensembl Gene ID:
ENSAPLG00000015166
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015800
6514590 - 6524247
9658