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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_652213_653012_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
652213 - 653012
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTGTTTATTT
Flanking Amino Acid:
NKKEGALGIDGFTNYMRSPS
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.6
0.82
0.8
80.7
35.9
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
55.4
0.25
2
76.5
40.9

Associated Gene:

Gene:
PLCH2
Ensembl Gene ID:
ENSAPLG00000008995
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024566
608633 - 677192
68560
ENSAPLT00000009364
616883 - 675778
58896