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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6531795_6532648_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6531795 - 6532648
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TCCCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GCCTCCTCATCC
Flanking Amino Acid:
CMPAQSMWEIVTLDCPGNDE
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
76.1
32.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
80.9
0.7
0.7
72.7
32.1
Minor 5ss
37.4
-1.4
2.9
51.7
39.2
Minor BPS
50
-0
1.9
59.17
45.7

Associated Gene:

Gene:
NBL1
Ensembl Gene ID:
ENSAPLG00000015130
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015768
6531540 - 6533152
1613